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Circular dichroism (CD) spectroscopy analysis software tools

Circular dichroism (CD) spectroscopy is a technique that is widely used to detect protein conformation changes and to define protein secondary structures in solution (Nordén et al., 2010; Wallace and Janes, 2009). Synchrotron radiation…
PCDDB
Dataset

PCDDB Protein Circular Dichroism Data Base

Archives circular dichroism spectroscopic data and associated bioinformatics…

Archives circular dichroism spectroscopic data and associated bioinformatics and experimental metadata. Since its inception, many improvements and new developments have been made in data display,…

PDB2CD
Web

PDB2CD Protein Data Bank 2 Circular Dichroism

Produces circular dichroism spectra from protein atomic coordinate file. PDB2CD…

Produces circular dichroism spectra from protein atomic coordinate file. PDB2CD utilizes a combination of structural features within the conformation of a protein; not only its percentage secondary…

Del…
Desktop

Del Villar-GuerraEtAL2017

Provides an analytical approach to quantitative secondary structural…

Provides an analytical approach to quantitative secondary structural information about quadruplexes from their measured CD spectra. Del Villar-GuerraEtAL2017 is an upon request algorithm to derive…

DichroCalc
Web

DichroCalc

A web interface that makes Circular dichroism (CD) and linear dichroism (LD)…

A web interface that makes Circular dichroism (CD) and linear dichroism (LD) calculations available for the use of non-theoreticians, thus considerably improving the access to such calculations.…

ValiDichro
Web

ValiDichro

Provides a means of testing protein circular dichroism (CD) spectral data and…

Provides a means of testing protein circular dichroism (CD) spectral data and metadata for quality, completeness and consistency, as well as identifying unusual but potentially important deviations…

DichroMatch
Web

DichroMatch

Provides a means of identifying spectral nearest neighbours for an input query…

Provides a means of identifying spectral nearest neighbours for an input query circular dichroism (CD) spectrum based on a reference data set of CD spectra. The default reference data set consists of…

DICHROWEB
Web

DICHROWEB

Provides access to a number of circular dichroism secondary structure…

Provides access to a number of circular dichroism secondary structure calculation algorithms and reference databases in a user-friendly manner. DICHROWEB accepts a wide range of data formats and…

BeStSel
Web

BeStSel Beta Structure Selection

A method for the secondary structure determination and fold recognition from…

A method for the secondary structure determination and fold recognition from protein circular dichroism spectra. BeStSel allows structural biologists to solve the secondary structure of their protein…

2Struc
Web

2Struc

The 2Struc server provides two functionalities; 2Struc, which generates…

The 2Struc server provides two functionalities; 2Struc, which generates secondary structure element (SSE) assignments for protein structures for up to eight different methods enabling easy analyses…

CAPITO
Web

CAPITO CD Anaylsis and Plotting Tool

A web server-based analysis tool for interpreting circular dichroism (CD)…

A web server-based analysis tool for interpreting circular dichroism (CD) spectra. CAPITO allows the simultaneous evaluation of multiple datasets. Hence, it is suitable for the investigation of a…

K2D
Web

K2D

Predicts secondary structural content from a circular dichroism (CD) spectrum.…

Predicts secondary structural content from a circular dichroism (CD) spectrum. K2D takes advantage of a recent notable development in the field of CD spectra estimation from structural data,…

CCA+
Desktop

CCA+

Provides a simple way to analyse single or multiple circular dichroism (CD)…

Provides a simple way to analyse single or multiple circular dichroism (CD) spectra, resulting in data that can be applied in a quantitative form. CCA+ incorporates two CD spectrum analysis method:…

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