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CGView | A comparative genomics tool for circular genomes

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Generates graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots. CGView can supply the sequences in different format (raw, FASTA, GenBank or EMBL). BLAST is used by the server to compare the sequence sets. Then, the results are converted in a graphical map which shows all the sequence. The web tool includes different options to control which types of features are displayed and how the features are drawn. The server can be used to aid in the identification of conserved or diverged genome segments, instances of horizontal gene transfer, and differences in gene copy number.

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CGView classification

CGView specifications

Unique identifier:
OMICS_00905
Alternative name:
CGView Server
Interface:
Graphical user interface
Operating system:
Unix/Linux
Computer skills:
Medium
Maintained:
Yes
Name:
Circular Genome Viewer
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Java
Stability:
Stable

Subtools

  • CGView Server

CGView distribution

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CGView forum

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CGView classification

CGView specifications

Unique identifier:
OMICS_00905
Alternative name:
CGView Server
Restrictions to use:
None
Input format:
GenBank, EMBL, FASTA, or raw format.
Version:
1.0
Maintained:
Yes
Name:
Circular Genome Viewer
Interface:
Web user interface, Application programming interface
Input data:
A DNA sequence.
Computer skills:
Basic
Stability:
Stable

Subtools

  • CGView Server

CGView support

Maintainers

  • Paul Stothard <>
  • Jason Grant <>
  • Paul Stothard <>
  • Jason Grant <>

Additional information

Web app: http://stothard.afns.ualberta.ca/cgview_server/

Credits

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Publications

Institution(s)

Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada

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