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Circular genome generation software tools | Annotation

Circular genome representations provide an excellent way to comprehensively inspect genome-wide data.

Source text:
(Overmars et al., 2015) CiVi: circular genome visualization with unique features to analyze sequence elements. Bioinformatics.

CGView
Desktop
Web

CGView Circular Genome Viewer

Generates graphical maps of circular genomes that show sequence features, base…

Generates graphical maps of circular genomes that show sequence features, base composition plots, analysis results and sequence similarity plots. CGView can supply the sequences in different format…

BRIG
Desktop

BRIG BLAST Ring Image Generator

A cross-platform (Windows/Mac/Unix) application that can display circular…

A cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data.

DNAPlotter
Desktop

DNAPlotter

An interactive Java application for generating circular and linear…

An interactive Java application for generating circular and linear representations of genomes. Making use of the Artemis libraries to provide a user-friendly method of loading in sequence files…

GenomeVx
Web

GenomeVx

Constructs editable, publication-quality, maps of mitochondrial and chloroplast…

Constructs editable, publication-quality, maps of mitochondrial and chloroplast genomes and of large plasmids. GenomeVx indicates the location of genes and chromosomal features as well as a position…

GenomeD3Plot
Desktop

GenomeD3Plot

A light weight visualization library written in JavaScript using the D3…

A light weight visualization library written in JavaScript using the D3 library. GenomeD3Plot provides a rich API to allow the rapid visualization of complex genomic data using a convenient standards…

CiVi
Web

CiVi

A user-friendly web-based tool to create custom circular maps to aid the…

A user-friendly web-based tool to create custom circular maps to aid the analysis of microbial genomes and sequence elements. Sequence related data such as gene-name, COG class, PFAM domain, GC%, and…

MizBee
Desktop

MizBee

A multiscale synteny browser for exploring conservation relationships in…

A multiscale synteny browser for exploring conservation relationships in comparative genomics data.

OGDRAW
Desktop
Web

OGDRAW OrganellarGenomeDraw

A suite of software tools that enable users to create high-quality visual…

A suite of software tools that enable users to create high-quality visual representations of both circular and linear annotated genome sequences provided as GenBank files or accession numbers.…

GeneWiz
Web

GeneWiz

Serves to visualise genomic data of prokaryotic chromosomes. The GeneWiz…

Serves to visualise genomic data of prokaryotic chromosomes. The GeneWiz browser allows users to perform various analyses like mapping alignments of homologous genes to other genomes, mapping of…

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