circRNA viewers | RNA-seq analysis

Circular RNA visualization software tools | RNA sequencing data analysis

Circular RNAs (circRNAs) are novel rising stars of noncoding RNAs, which are highly abundant and evolutionarily conserved across species. Number of publications related to circRNAs increased sharply in recent years, representing emerging focuses in the field. Therefore, tools, pipelines and databases have been developed to identify and store circRNAs.

Source text:
(Feng et al., 2017) CircView: a visualization and exploration tool for circular RNAs. Nucleic Acids Res.

CircView

Visualizes and explores circular RNAs (circRNAs). CircView is a desktop application for visualization and exploration of circRNAs in the context of a reference genome. This method is designed based on sets of interfaces and extendable modules, which includes three conceptual layers: (i) an interaction layer, (ii) a model layer, and (iii) a data persistence layer. Furthermore, this application allows users to view regulatory elements, including miRNA response element (MRE) and RNA-binding protein (RBP) binding sites.