CircularMapper statistics

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CircularMapper specifications

Information


Unique identifier OMICS_20212
Name CircularMapper
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, Shell (Bash)
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.93.4
Stability Stable
Maintained Yes

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  • person_outline Alexander Peltzer <>

CircularMapper in publications

 (2)
PMCID: 5794802
PMID: 29391530
DOI: 10.1038/s41598-018-20180-z

[…] procedure was performed with bwa 0.7.15 and reads were mapped against the hg19 human reference genome. for the mitochondrial capture data, reads were mapped against the rcrs reference genome. the circularmapper approach as implemented in eager was used with default settings to increase mapping qualities towards the ends of the utilized mitochondrial reference genome. in all three datasets, […]

PMCID: 5459999
PMID: 28556824
DOI: 10.1038/ncomms15694

[…] (truseq pe cluster kit v3-cbot-hs)., the resulting fastq files have been processed using eager v1.92 (ref. ). to achieve improved coverages at both ends of the mitochondrial reference, we used the circularmapper option in eager. all reads with a mapping quality of at least 30 were kept for the subsequent analysis. duplicate reads have been removed using dedup v0.9.10, included in the eager […]


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