Cister specifications

Unique identifier:
OMICS_13964
Interface:
Web user interface
Input data:
DNA sequences or a GenBank identifier, types of cis-elements, algorithmic parameters
Output data:
Annotated protein coding regions, a plot with cis-elements positions, a table of high-scoring cis-elements
Computer skills:
Basic
Maintained:
Yes
Name:
Cis-element Cluster Finder
Restrictions to use:
None
Input format:
FASTA
Programming languages:
C
Stability:
Stable

Cister specifications

Unique identifier:
OMICS_13964
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes
Name:
Cis-element Cluster Finder
Interface:
Command line interface
Input data:
DNA sequences or a GenBank identifier, types of cis-elements, algorithmic parameters
Output data:
Annotated protein coding regions, a plot with cis-elements positions, a table of high-scoring cis-elements
Programming languages:
C
Stability:
Stable

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

Cister distribution

download

Cister support

Documentation

Maintainer

  • Martin Frith <>
  • Martin Frith <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Bioinformatics Program, Boston University, Boston, MA, USA; Department of Biology, Boston University, Boston, MA, USA; Department of Biomedical Engineering, Boston University, Boston, MA, USA

Funding source(s)

This work was partially supported by NSF grant DBI#0078194 and by NIH grant #CA81157.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools