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Cis-Finder specifications


Unique identifier OMICS_25382
Name Cis-Finder
Alternative name Cis Elements Finder
Interface Web user interface
Restrictions to use None
Input data A sequence.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes


Cis-Finder citation


Ancient Pbx Hox signatures define hundreds of vertebrate developmental enhancers

PMCID: 3261376
PMID: 22208168
DOI: 10.1186/1471-2164-12-637

[…] results in even stronger enrichment for this 'kr' motif (additional file )., we complemented our 'bottom-up' search for pbx-hox motifs in cnes with a 'top-down' de novo motif search using the tool cis-finder []. strikingly, one of the top-scoring predicted motifs identified by cis-finder matches our consensus kr motif for a set of 6, 693 human sequences from the condor cne database [] ('condor […]

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