CEAS specifications

Information


Unique identifier OMICS_00802
Name CEAS
Alternative name Cis-regulatory Element Annotation System
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data ChIP regions, ChiP enrichment signal and gene annotation table file
Input format BED, WIG, sqlite3
Output data R script to generate the graphical results and gene-centered annotation in a tab-delimited txt file
Output format PDF, XLS, R
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Maintainer


  • person_outline Hyunjin Shin <>

Information


Unique identifier OMICS_00802
Name CEAS
Alternative name Cis-regulatory Element Annotation System
Interface Web user interface
Restrictions to use None
Input format BED, GFF
Programming languages Python
Computer skills Basic
Stability Stable
Source code URL http://ceas.cbi.pku.edu.cn/submit.htm
Maintained Yes

Maintainer


  • person_outline Hyunjin Shin <>

CEAS articles

CEAS institution(s)
Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, MA, USA

CEAS review

star_border star_border star_border star_border star_border
star star star star star

Fabien Pichon

star_border star_border star_border star_border star_border
star star star star star
Desktop
I used it for ChIP-seq, to annotate Peaks. But I also used Homer tools and results were quite different.... for example in 5'-UTR (4.1% vs 2.4%). I guess it comes from the definition of what a region is, but I used a small file of 10 peaks and CEAS returned strange percentages... I think that CEAS splits a peak if it can fit in 2 regions, to check... I like the pie charts representation.