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Cis-regulatory RNA element detection software tools | Transcription data analysis

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RECIT / Regulatory Element Comparison and Integration Tool
Obsolete
Allows users to determine regulatory sequence elements from sets of co-regulated genes. RECIT is a web application with the aim of assisting in the integration and prioritization of elements for mechanistic laboratory-based experiments. The software is able to create visualizations. The platform accepts position-specific probability matrixes (PSPMs) from various element discovery software as well as outputs from BioProspector, Weeder, or RNAProfile software.
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