CisFinder protocols

CisFinder specifications

Information


Unique identifier OMICS_06290
Name CisFinder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainers


  • person_outline Alexei Sharov <>
  • person_outline Minoru Ko <>

Information


Unique identifier OMICS_06290
Name CisFinder
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Alexei Sharov <>
  • person_outline Minoru Ko <>

Publication for CisFinder

CisFinder IN pipeline

2016
PMCID: 4891180
PMID: 27178982
DOI: 10.7554/eLife.12717.044

[…] et al., 2008) (default parameters). profiles of genomic regions were generated using d-peaks source code (brohée et al., 2012). a de novo search for motifs enriched at peak summits was done with cisfinder (sharov and ko, 2009) using default parameters and a background control set of 100 bp genomic regions located 3kp upstream input regions. calculation of p-values for the association […]

CisFinder institution(s)
Developmental Genomics and Aging Section, Laboratory of Genetics, National Institute on Aging, NIH, Baltimore, MD, USA
CisFinder funding source(s)
Supported entirely by the Intramural Research Program of the NIH, National Institute on Aging.

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