CisGenome specifications


Unique identifier OMICS_00423
Name CisGenome
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++
Computer skills Advanced
Version 2.0
Stability Stable
Maintained Yes


  • Invertebrates
    • Drosophila melanogaster
  • Plants and Fungi
    • Arabidopsis thaliana
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus



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  • person_outline Wing Hung Wong <>
  • person_outline Hongkai Ji <>
  • person_outline Wenxiu Ma <>

Additional information

Publication for CisGenome

CisGenome institution(s)
Department of Biostatistics Johns Hopkins Bloomberg School of Public Health, Baltimore, MD, USA; Institute for Computational and Mathematical Engineering Stanford University Durand Building, Stanford, CA, USA; Department of Computer Science Stanford University 353 Serra Mall Stanford, CA, USA; Department of Genetics Stanford University School of Medicine, Stanford, CA, USA; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA; Department of Statistics Stanford University Sequoia Hall, Stanford, CA,USA; Department of Health Research and Policy Stanford University Sequoia Hall, Stanford, CA, USA
CisGenome funding source(s)
Supported by NIH grant HG003903 (WHW), and by NHGRI's ENCODE project (RMM), and partially by the JHSPH Richard L. Gelb Cancer Research Fund.

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