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cisPath specifications

Information


Unique identifier OMICS_16067
Name cisPath
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data The output directory contains the shortest paths from a source protein to the target proteins.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.20.0
Stability Stable
Requirements
R(>=2.10.0), methods, utils
Maintained Yes

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Documentation


Maintainer


  • person_outline Likun Wang

cisPath citation

library_books

cisPath: an R/Bioconductor package for cloud users for visualization and management of functional protein interaction networks

2015
BMC Syst Biol
PMCID: 4331675
PMID: 25708840
DOI: 10.1186/1752-0509-9-S1-S1

[…] they have collected from databases. However, users often experience difficulties in editing such collected information, as well as in constructing and sharing integrated PPI networks. The aim of this cisPath package is to simplify all of these processes. With cisPath, users can combine PPI information downloaded from different databases, add private data to these combinations, and construct new an […]


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