cisTargetX pipeline

cisTargetX specifications

Information


Unique identifier OMICS_18785
Name cisTargetX
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Maintainers


This tool is not available anymore.

Publication for cisTargetX

cisTargetX IN pipeline

2013
PMCID: 4053989
PMID: 23972280
DOI: 10.1186/gb-2013-14-8-r86

[…] gene expression omnibus [66] and are accessible through geo series accession number gse48791., detection of motifs enriched in svb-dependent and svb-independent epidermal genes was performed using cistargetx [40]. for de novo motif discovery, genomic sequences of enhancer and negative regions were processed through a c++ program and statistical operations performed within the r software, […]

cisTargetX institution(s)
Laboratory of Neurogenetics, Department of Molecular and Developmental Genetics, VIB, Leuven, Belgium; Laboratory of Computational Biology, Katholieke Universiteit (K.U.) Leuven, Leuven, Belgium; Center for Human Genetics, K.U. Leuven, Leuven, Belgium; Doctoral Program in Molecular and Developmental Genetics, K.U. Leuven Group Biomedicine, Leuven, Belgium
cisTargetX funding source(s)
Supported by VIB and Impuls, CREA, and Geconcerteerd Onderzoeksacties (GOA) grants from K.U. Leuven, FWO project 3M070090, and FWO postdoctoral fellowship.

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