cisTEM statistics

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Citations per year

Number of citations per year for the bioinformatics software tool cisTEM
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Tool usage distribution map

This map represents all the scientific publications referring to cisTEM per scientific context
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Popular tool citations

chevron_left 3D macromolecule reconstruction Particle picking CTF estimation/correction Image registration Image classification Single particle analysis chevron_right
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Protocols

cisTEM specifications

Information


Unique identifier OMICS_26527
Name cisTEM
Alternative name Computational Imaging System for Transmission Electron Microscopy
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Version 1.0.0
Stability Beta
Source code URL https://cistem.org/system/tdf/upload3/cistem-1.0.0-beta-source-code.tar.gz?file=1&type=cistem_details&id=37&force=0
High performance computing Yes
Maintained Yes

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Publication for Computational Imaging System for Transmission Electron Microscopy

cisTEM citations

 (4)
library_books

Trends in the Electron Microscopy Data Bank (EMDB)

2017
Acta Crystallogr D Struct Biol
PMCID: 5458492
PMID: 28580912
DOI: 10.1107/S2059798317004181

[…] ompetitors are trying to redress the imbalance with new and improved solutions; for instance, Jeol with a new automatic specimen-loading system, a redesigned FREALIGN with a graphical user interface (cisTEM; personal communication with Timothy Grant, Janelia Research Campus), and the FEI Falcon III camera, which will even be retrofitted onto the most recently sold FEI microscope systems with a Fal […]

library_books

Current Treatment Strategies for Intracranial Aneurysms: An Overview

2017
PMCID: 5724574
PMID: 28355880
DOI: 10.1177/0003319717700503

[…] rostrum of the corpus callosum; (2) the MCA branches, through the sylvian fissure; (3) the posterior cerebral artery (PCA) and superior cerebellar artery, the section around midbrain through ambient cistem; and (4) the posterior ICAs (PICAs), around the posterior medulla and the tonsils in cisterna magna. In the cases where a tension-free anastomosis is not possible, GSV or RA grafts are used. Cu […]

library_books

Structure of RNA polymerase bound to ribosomal 30S subunit

2017
eLife
PMCID: 5655137
PMID: 29027901
DOI: 10.7554/eLife.28560.031

[…] ce contamination, or very thin ice were excluded from further analysis after inspection of image sums and power spectra from CTFFIND4. Particles were automatically picked from full-sized images using cisTEM, software that implements a template-based algorithm (). 560 × 560 pixel boxes with particles were extracted from super-resolution images, and the stack and FREALIGN parameter file were exporte […]

call_split

Mistletoe Infection in an Oak Forest Is Influenced by Competition and Host Size

2015
PLoS One
PMCID: 4436252
PMID: 25992920
DOI: 10.1371/journal.pone.0127055
call_split See protocol

[…] l neighbouring stems from the effects of larger stems. Furthermore, as a more complex measure of competition, we calculated the tree-level density-dependent Hegyi competition index [] for both stems (CIstem) and trees (CItree), also within a radius of 12 m around each stem or tree. The formula of the Hegyi competition index is as follows: CIHegyi=∑j=1ndjdi(lij+1) where di is the DBH of subject ste […]


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