cisTEM statistics

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Citations per year

Number of citations per year for the bioinformatics software tool cisTEM

Tool usage distribution map

This map represents all the scientific publications referring to cisTEM per scientific context
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Associated diseases


Popular tool citations

chevron_left 3D macromolecule reconstruction Particle picking CTF estimation/correction Image registration Image classification Single particle analysis chevron_right
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cisTEM specifications


Unique identifier OMICS_26527
Name cisTEM
Alternative name Computational Imaging System for Transmission Electron Microscopy
Software type Pipeline/Workflow
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Version 1.0.0
Stability Beta
Source code URL
High performance computing Yes
Maintained Yes




No version available


Publication for Computational Imaging System for Transmission Electron Microscopy

cisTEM citations


Trends in the Electron Microscopy Data Bank (EMDB)

Acta Crystallogr D Struct Biol
PMCID: 5458492
PMID: 28580912
DOI: 10.1107/S2059798317004181

[…] ompetitors are trying to redress the imbalance with new and improved solutions; for instance, Jeol with a new automatic specimen-loading system, a redesigned FREALIGN with a graphical user interface (cisTEM; personal communication with Timothy Grant, Janelia Research Campus), and the FEI Falcon III camera, which will even be retrofitted onto the most recently sold FEI microscope systems with a Fal […]


Current Treatment Strategies for Intracranial Aneurysms: An Overview

PMCID: 5724574
PMID: 28355880
DOI: 10.1177/0003319717700503

[…] rostrum of the corpus callosum; (2) the MCA branches, through the sylvian fissure; (3) the posterior cerebral artery (PCA) and superior cerebellar artery, the section around midbrain through ambient cistem; and (4) the posterior ICAs (PICAs), around the posterior medulla and the tonsils in cisterna magna. In the cases where a tension-free anastomosis is not possible, GSV or RA grafts are used. Cu […]


Structure of RNA polymerase bound to ribosomal 30S subunit

PMCID: 5655137
PMID: 29027901
DOI: 10.7554/eLife.28560.031

[…] ce contamination, or very thin ice were excluded from further analysis after inspection of image sums and power spectra from CTFFIND4. Particles were automatically picked from full-sized images using cisTEM, software that implements a template-based algorithm (). 560 × 560 pixel boxes with particles were extracted from super-resolution images, and the stack and FREALIGN parameter file were exporte […]


Mistletoe Infection in an Oak Forest Is Influenced by Competition and Host Size

PLoS One
PMCID: 4436252
PMID: 25992920
DOI: 10.1371/journal.pone.0127055
call_split See protocol

[…] l neighbouring stems from the effects of larger stems. Furthermore, as a more complex measure of competition, we calculated the tree-level density-dependent Hegyi competition index [] for both stems (CIstem) and trees (CItree), also within a radius of 12 m around each stem or tree. The formula of the Hegyi competition index is as follows: CIHegyi=∑j=1ndjdi(lij+1) where di is the DBH of subject ste […]

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