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CGD specifications


Unique identifier OMICS_32154
Name CGD
Alternative name Citrus Genome Database
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Maintained Yes

Additional information

CGD citations


Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases

PMCID: 5727400
DOI: 10.1093/database/bax092

[…] e i5k Workspace ( (), the Cool Season Food Legume Database (CSFL, (), the Legume Information System ( () and the Citrus Genome Database (CGD, (). For a more extensive list of databases currently using Tripal see, an open source, popular and well-supported […]


Genome resequencing and transcriptome profiling reveal structural diversity and expression patterns of constitutive disease resistance genes in Huanglongbing tolerant Poncirus trifoliata and its hybrids

PMCID: 5686287
PMID: 29152310
DOI: 10.1038/hortres.2017.64

[…] Poncirus ESTs were downloaded from the citrus genome database ( The Arabidopsis CDR1 gene sequence was used in BLASTP searches against the EST database to identify CDR genes-rel […]


Development of single copy nuclear intron markers for species level phylogenetics: Case study with Paullinieae (Sapindaceae)1

Appl Plant Sci
PMCID: 5628028
PMID: 28989824
DOI: 10.3732/apps.1700051

[…] The ‘Citrus sinensis CDS’ (46,147 sequences; C. sinensis genome version 1.0) and genome annotation files were downloaded from the Citrus Genome Database ( [accessed 22 August 2015]; ). Sequences in this CDS file are mature mRNA strands void of introns and untranslated regions. Of these 46,147 mature mRNAs, […]


Solar thermotherapy reduces the titer of Candidatus Liberibacter asiaticus and enhances canopy growth by altering gene expression profiles in HLB affected citrus plants

PMCID: 5615044
PMID: 28955443
DOI: 10.1038/hortres.2017.54
call_split See protocol

[…] e read numbers for each gene were counted using STAR with a maximum intron 5000 bp (−alignIntronMax 5000). The Citrus clementina reference genome and corresponding annotation were downloaded from the Citrus Genome Database ( Differentially expressed (DE) genes between each group were identified using the DESeq2 Bioconductor package. Raw counts of each gene were norm […]


Variability in CitXET expression and XET activity in Citrus cultivar Huangguogan seedlings with differed degrees of etiolation

PLoS One
PMCID: 5472283
PMID: 28617857
DOI: 10.1371/journal.pone.0178973

[…] iciosa (L46792.1), Vitis vinifera (AY043238.1), Solanum lycopersicum (D16456.1), Fragaria chiloensis (GQ280283.1), Pyrus pyrifolia (EU432411.1), and Malus domestica (AY144593.1). We also searched the Citrus Genome Database ( to identify the homologous citrus XET gene (CitXET). The Primer 3.0 online tool ( was used to design CitXET-speci […]


Alternative oxidase (AOX) constitutes a small family of proteins in Citrus clementina and Citrus sinensis L. Osb

PLoS One
PMCID: 5411082
PMID: 28459876
DOI: 10.1371/journal.pone.0176878

[…] The identification and structural analysis of the AOX genes (introns/exons) were performed using the Citrus Genome Database ( Open reading frame (ORF) analysis was performed using the ORFinder software ( The prediction of the th […]


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