CLANS pipeline

CLANS specifications


Unique identifier OMICS_20383
Alternative name CLuster ANalysis of Sequences
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A file with protein sequences or a matrix of precomputed attraction values.
Input format FASTA
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Maintained No


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Publication for CLuster ANalysis of Sequences

CLANS IN pipeline

PMCID: 5447875
PMID: 28398557
DOI: 10.1093/jxb/erx113

[…] three functionally distinct classes, which are named doxa, doxb, and doxc in other organisms. only two classes were identified in s. miltiorrhiza from the phylogenetic tree (fig. 1a). blastp and clans were used to further confirm the classification of 2ogds in s. miltiorrhiza; however, the results showed that three 2ogds, namely smil_00001058, smil_00013421, and smil_00021498, […]

CLANS institution(s)
Max Planck Institut fuer Entwicklungsbiologie, Tuebingen, Germany

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