CLARI-TE specifications

Unique identifier:
OMICS_13534
Interface:
Command line interface
Input data:
The xm output file of RepeatMasker, a tabular file containing the classification of the library use in RepeatMasker, a tabular file containing the position of the LTR retrotransposons present in the library, embl file containing the gene annotation of the sequence (in triAnnot format), a FASTA-format file containing your query sequence.
Output data:
Prediction
Operating system:
Unix/Linux
License:
CeCILL version 2.1
Version:
1.0
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
License purchase required
Input format:
XM, FASTA
Output format:
EMBL
Programming languages:
Perl
Computer skills:
Advanced
Stability:
Stable
  • Plants
    • Triticum aestivum

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CLARI-TE support

Documentation

Maintainer

  • Josquin Daron <>

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Publications

Institution(s)

INRA UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France; University Blaise Pascal UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Clermont-Ferrand, France; INRA-URGI, Centre de Versailles, Versailles, France; CEA/DSV/IG/Genoscope, Evry, France; CNRS UMR 8030, Evry, France; Université d’Evry, Evry, France

Funding source(s)

This project was supported by grants from the French National Research Agency (ANR-09-GENM-025 3BSEQ), a grant from France Agrimer, a grant (project DL-BLE) from the INRA BAP division; and partly by a grant from the French Ministry of Research, by a grant from the European Commission research training program Marie-Curie Actions (FP7-MC-IIF-NoncollinearGenes) and by a grant from the Region Auvergne.

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