Extends the development and maintenance of structural classification of proteins (SCOP). SCOPe provides ongoing classification of new Protein Data Bank (PDB) structures in the context of the SCOP hierarchy, backward compatibility with SCOP, manual correction of errors and stable releases suitable for benchmarking. It also incorporates and updates the ASTRAL compendium, a collection of software and databases used to aid in the analysis of the protein structures.
Standardizes protein and gene names recorded in the UniProtKB database. BioThesaurus provides a collection of vocabulary that can be used for: (i) dictionary-based biological named entity tagging of text; (ii) name mapping service for searching synonymous names and resolving name ambiguities; (iii) literature mining (iv) name standardization and nomenclature for avoiding conflicts with names of other entities.
Includes stress-tolerance genes and proteins for many crop species. CSTDB is an online resource that contains over 1300 abiotic stress-tolerance genes or proteins and 200 genes or proteins associated with biotic stress. Furthermore, this database has two majors functions: browsing information and downloading data.
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