CLC Genomics Workbench specifications
|Name||CLC Genomics Workbench|
|Interface||Command line interface, Graphical user interface|
|Restrictions to use||License purchase required|
|Operating system||Unix/Linux, Mac OS, Windows|
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- person_outline CLC Genomics Workbench Team <>
#1 opened on 2017-10-29 by salvador_angel • 1 answer
The OMIC tools classification says that is CLI but it's main interface is actually GUI and the CLI is only used when you want to interface the Workbench CLient with the Workbench Server.
Hi Salvador! We have added the GUI as the interface of this tool, but also let the CLI to indicate this possibility. Best regards.
CLC Genomics Workbench IN pipelines(412)
[…] spin kit (ge healthcare do brasil ltda, são paulo, brazil). whole-genome sequencing was performed through illumina™ miseq platform with 300 bp paired-end library. de novo assembly was performed with clc genomics workbench 7.5.1 (clc bio, denmark) and geneious 10.0.3 (biomatters ltd, auckland, new zealand)., the obtained contigs were ordered according to l. interrogans serovar copenhageni strain […]
[…] ltda, são paulo, brazil). whole-genome sequencing was performed through illumina™ miseq platform with 300 bp paired-end library. de novo assembly was performed with clc genomics workbench 7.5.1 (clc bio, denmark) and geneious 10.0.3 (biomatters ltd, auckland, new zealand)., the obtained contigs were ordered according to l. interrogans serovar copenhageni strain fiocruz l1-130 reference […]
[…] length of 2 × 75 bases were generated. primary transcriptome libraries were sequenced in single read mode with a read length of 35 or 75 bases., read processing and mapping was carried out with the clc genomics workbench (qiagen aarhus a/s). reads were trimmed by removing adapter sequences using the trim sequences tool and filtered for phred quality scores <30 . reads from primary […]
[…] and overall quality was improved by trimming the reads using trimmomatic121, with following parameters: crop = 95, headcrop = 10, minlen = 85., high quality rna-seq reads were mapped using the clc genomics workbench (v. 9.5.3)., traces of ribosomal rna contamination were removed from all libraries by mapping against sunflower ribosomal sequences downloaded from the ncbi database […]
[…] pirna (http://www.ncbi.nlm.nih.gov/and http://pirnabank.ibab.ac.in/) and rfam database (http://rfam.sanger.ac.uk/) with a tolerance of two mismatches using the software of clc genomics_workbench 5.5. sequences that did not overlap with any annotated sequence were classified as unannotated reads. next, the annotated small rnas varying between 18 to 35 nt were classified […]