CLC Genome Finishing Module specifications

Information


Unique identifier OMICS_33309
Name CLC Genome Finishing Module
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Biological technology Pacific Biosciences
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 1.9
Stability Stable
Requirements
CLC Genomics Workbench
Free trial Yes
Registration required Yes
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline CLC Genomics Workbench Team

CLC Genome Finishing Module citations

 (2)
library_books

Complete Genome Sequences of Lactobacillus curvatus KG6, L. curvatus MRS6, and Lactobacillus sakei FAM18311, Isolated from Fermented Meat Products

2017
Genome Announc
PMCID: 5609406
PMID: 28935727
DOI: 10.1128/genomeA.00915-17

[…] witzerland). Genome assembly of KG6 and MRS6 was performed using the SMRT Analysis system SMRT Portal (version 2.3.0.140936.p1.142411; Pacific Biosciences). The genome of FAM18311 was assembled using CLC Genome Finishing Module version 1.6.2 (Qiagen, Aarhus, Denmark). All genomes reached 300× coverage, assembled from 77,000 to 105,000 reads with an N50 read length between 23,000 and 32,000 nucleot […]

library_books

Genome architecture of Lactobacillus plantarum PS128, a probiotic strain with potential immunomodulatory activity

2015
PMCID: 4536865
PMID: 26279684
DOI: 10.1186/s13099-015-0068-y

[…] the 35 contigs as 24 chromosome-derived contigs and 11 plasmid-like contigs based on BLAST search results against the non-redundant nucleotide database at NCBI. Using the Join Contigs function in the CLC Genome Finishing Module (Qiagen) with PacBio reads for guidance and a BLAST word size of 50 nt, the resulting 24 chromosome-derived contigs were further merged into 2 chromosome-derived super-cont […]

CLC Genome Finishing Module institution(s)
QIAGEN, Aarhus, Denmark

CLC Genome Finishing Module reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CLC Genome Finishing Module