CLC bio specifications
|Name||CLC Genomics Workbench|
|Interface||Command line interface, Graphical user interface|
|Restrictions to use||License purchase required|
|Operating system||Unix/Linux, Mac OS, Windows|
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- person_outline CLC Genomics Workbench Team <>
#1 opened on 2017-10-29 by salvador_angel • 1 answer
The OMIC tools classification says that is CLI but it's main interface is actually GUI and the CLI is only used when you want to interface the Workbench CLient with the Workbench Server.
Hi Salvador! We have added the GUI as the interface of this tool, but also let the CLI to indicate this possibility. Best regards.
CLC bio citations(125)
[…] (https://www.arabidopsis.org/) was used as the reference sequence for mapping and variant detection. furthermore, sequenced reads of taqed plant genome were mapped using commercial software (clc genomics workbench v.8.5; qiagen). these variants were also called using this software, with variant-detection workflow shown in supplementary fig. 12., to detect the rearrangements induced […]
[…] accession gca_001019125.1). unique variants found in the selected strains that were absent in control strains are reported. additional low-frequency mutations in mgra and fmtc were identified using clc genomics workbench version 7.0 (clc bio, ma, usa)., the effect of the efflux pump inhibitor thioridazine on s. aureus mw2 susceptibility to hmpc was evaluated using the 2-fold microdilution […]
[…] with a minimum coverage of 40–120-fold. we prepared libraries with the nextera xt dna sample preparation kit (illumina) and de novo assembled whole-genome sequence contigs for each strain by using clc genomics workbench version 7.5.1 (qiagen, valencia, ca, usa)., we initially investigated the position of the strains from spain and the united kingdom on the global phylogeny of v. […]
[…] sequenced (single-end) at the yale center for genome analysis (ycga) using the hiseq2500 system (illumina). read files have been deposited in the ncbi bioproject database (id# prjna358388)., using clc genomics workbench 8 (qiagen), transcriptome reads were first trimmed and filtered to remove ambiguous nucleotides and low-quality sequences. the remaining reads were mapped to glossina morsitans […]
[…] with the clc genomics workbench 9.0 software package using the “trim sequences” tool with standard parameters. mapping of the trimmed reads to the reference sequences was also performed with the clc genomics workbench 9.0 using the “map reads to reference” tool with standard parameters. for quantification of gene expression (read counting), the alignments generated with the genomics […]