cleanUpdTSeq specifications
Information
| Unique identifier | OMICS_15785 |
|---|---|
| Name | cleanUpdTSeq |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| License | GNU General Public License version 2.0 |
| Computer skills | Advanced |
| Version | 1.18.0 |
| Stability | Stable |
| Requirements |
methods, GenomicRanges, BiocStyle, R(>=2.15), BSgenome, RUnit, knitr, BiocGenerics(>=0.1.0), seqinr, BSgenome.Drerio.UCSC.danRer7, e1071
|
| Maintained | Yes |
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Versioning
No version available
Documentation
Maintainer
- person_outline Sarah Sheppard
Publication for cleanUpdTSeq
library_books
Accurate identification of polyadenylation sites from 3' end deep sequencing using a naive Bayes classifier.
2013 Bioinformatics
PMCID: 3789547
PMID: 23962617
DOI: 10.1093/bioinformatics/btt446
cleanUpdTSeq institution(s)
Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA, USA; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA
cleanUpdTSeq funding source(s)
Supported by a pre-doctoral fellowship from the American Heart Association (10PRE4170016) and by R01HL101374, from the National Heart, Lung, and Blood Institute.
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