cleanUpdTSeq specifications
Information
Unique identifier | OMICS_15785 |
---|---|
Name | cleanUpdTSeq |
Software type | Package/Module |
Interface | Command line interface |
Restrictions to use | None |
Operating system | Unix/Linux, Mac OS, Windows |
Programming languages | R |
License | GNU General Public License version 2.0 |
Computer skills | Advanced |
Version | 1.18.0 |
Stability | Stable |
Requirements |
methods, GenomicRanges, BiocStyle, R(>=2.15), BSgenome, RUnit, knitr, BiocGenerics(>=0.1.0), seqinr, BSgenome.Drerio.UCSC.danRer7, e1071
|
Maintained | Yes |
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Documentation
Maintainer
- person_outline Sarah Sheppard <>
Publication for cleanUpdTSeq
library_books
Accurate identification of polyadenylation sites from 3' end deep sequencing using a naive Bayes classifier.
2013 Bioinformatics
PMCID: 3789547
PMID: 23962617
DOI: 10.1093/bioinformatics/btt446
cleanUpdTSeq institution(s)
Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA, USA; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA
cleanUpdTSeq funding source(s)
Supported by a pre-doctoral fellowship from the American Heart Association (10PRE4170016) and by R01HL101374, from the National Heart, Lung, and Blood Institute.
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