cleanUpdTSeq specifications
- Unique identifier:
- OMICS_15785
- Interface:
- Command line interface
- Operating system:
- Unix/Linux, Mac OS, Windows
- License:
- GNU General Public License version 2.0
- Version:
- 1.12.0
- Requirements:
- BiocGenerics, BSgenome, BSgenome.Drerio.UCSC.danRer7, GenomicRanges, seqinr, e1071
- Software type:
- Package/Module
- Restrictions to use:
- None
- Programming languages:
- R
- Computer skills:
- Advanced
- Stability:
- Stable
- Maintained:
- Yes
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cleanUpdTSeq distribution
download
cleanUpdTSeq support
Documentation
Maintainer
- Sarah Sheppard <>
forum
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Publications
-
(Sheppard et al., 2013)
Accurate identification of polyadenylation sites from 3' end deep sequencing using a naive Bayes classifier.
Bioinformatics.
PMID: 23962617 DOI: 10.1093/bioinformatics/btt446
Institution(s)
Program in Gene Function and Expression, University of Massachusetts Medical School, Worcester, MA, USA; Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA
Funding source(s)
Supported by a pre-doctoral fellowship from the American Heart Association (10PRE4170016) and by R01HL101374, from the National Heart, Lung, and Blood Institute.
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