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ClearedLeavesDB specifications


Unique identifier OMICS_26399
Name ClearedLeavesDB
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes



  • person_outline Joshua Weitz

Publication for ClearedLeavesDB

ClearedLeavesDB citations


LEAFDATA: a literature curated database for Arabidopsis leaf development

Plant Methods
PMCID: 4754890
PMID: 26884807
DOI: 10.1186/s13007-016-0115-9

[…] loged and can be queried by keywords for phenotype or genes. Another collection accommodating cleared leaves with visible vascular architecture including 412 Arabidopsis pictures are available in the ClearedLeavesDB [, ]. The leaf senescence database (LSD) focuses on the last phase of leaf development that leads to organ death [–]. Manual and computational data were collected about senescence-asso […]


Costs and benefits of reticulate leaf venation

BMC Plant Biol
PMCID: 4177576
PMID: 25234042
DOI: 10.1186/s12870-014-0234-2

[…] vity at the whole leaf level. We have used what is, to our knowledge, the most extensive, publically available source of entire images of leaf networks (note the entire collection is available at We hope that future work on magnified images of entire leaf vein networks (which currently do not exist in large quantities) can confirm these results (see in []).The LEAF GUI s […]


Reading the leaves: A comparison of leaf rank and automated areole measurement for quantifying aspects of leaf venation1

Appl Plant Sci
PMCID: 4141712
PMID: 25202646
DOI: 10.3732/apps.1400006

[…] images and commented source code, documented in sufficient detail for comparatively small contributions to build on each other. Attempts have been made to provide this sort of facility (e.g.,,, but many more publications in this arena describe new software than provide source code for it. In an attempt to provide an example of the […]


The Influence of Branch Order on Optimal Leaf Vein Geometries: Murray’s Law and Area Preserving Branching

PLoS One
PMCID: 3877374
PMID: 24392008
DOI: 10.1371/journal.pone.0085420

[…] leared leaf image collection at the Smithsonian Institution. The collection, including the images used in this study, are currently available via an online database of cleared leaf images ( We went through the entire image collection, selecting only the best images for our analyses based on three criteria: 1) leaf networks were relatively free from tears or other d […]


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ClearedLeavesDB institution(s)
School of Biology, Georgia Institute of Technology, Atlanta, GA, USA; School of Physics, Georgia Institute of Technology, Atlanta, GA, USA; School of Interactive Computing, Georgia Institute of Technology, Atlanta, GA, USA; School of Plant Biology, University of Western Australia, Perth, Australia

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