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Cleavage site prediction

GraBCas
Desktop

GraBCas

Provides score-based prediction of potential cleavage sites for the caspases…

Provides score-based prediction of potential cleavage sites for the caspases 1-9 and granzyme B including an estimation of the fragment size. GraBCas offers an easy to use, concise user interface in…

hfAIM
Web

hfAIM high fidelity AIM system

A web tool for in silico genome-wide prediction of Atg8 interacting motifs…

A web tool for in silico genome-wide prediction of Atg8 interacting motifs (AIMs) in proteins. Using hfAIM it is possible to perform fast and reliable genome-wide screening of AIM containing proteins…

ProP
Web

ProP

Predicts arginine and lysine propeptide cleavage sites in eukaryotic protein…

Predicts arginine and lysine propeptide cleavage sites in eukaryotic protein sequences using an ensemble of neural networks.

Cascleave
Desktop

Cascleave Caspase substrate cleavage site prediction

Allows high-throughput in silico identification of substrate cleavage sites for…

Allows high-throughput in silico identification of substrate cleavage sites for various caspases from the amino acid sequences of the substrates. Cascleave aims to identify novel substrates and…

NetPicoRNA
Web

NetPicoRNA

Produces neural network predictions of cleavage sites of picornaviral proteases.

Produces neural network predictions of cleavage sites of picornaviral proteases.

SitePrediction
Web

SitePrediction

This tool will help you predict the cleavage site of a protease of which some…

This tool will help you predict the cleavage site of a protease of which some sites are already known. SitePrediction allows the use of a wide range of proteinases.

iLIR
Web

iLIR

Provides easy integrated access to bioinformatics tools aiming to help…

Provides easy integrated access to bioinformatics tools aiming to help researchers for assessing whether a protein is a potential functional LIR containing protein based solely on its amino acid…

NetCorona
Web

NetCorona

Prediction of Coronavirus 3CL Proteinase cleavage sites on amino acid sequences.

Prediction of Coronavirus 3CL Proteinase cleavage sites on amino acid sequences.

Pripper
Desktop

Pripper

A tool for reading an arbitrary number of proteins in FASTA format, predicting…

A tool for reading an arbitrary number of proteins in FASTA format, predicting their caspase cleavage sites and outputting the cleaved sequences to a new FASTA format sequence file. Pripper is a…

CleavePred
Web

CleavePred

A web tool for predicting the cleavage sites of proproteins such as prohormones…

A web tool for predicting the cleavage sites of proproteins such as prohormones and neuropeptides. CleavePred's algorithm is powered by ASAP, a Machine-Learning framework for predicting local…

ScreenCap3
Web

ScreenCap3 Screening of Caspase-3 substrates and Cleavage Site Prediction

Provides a web-based prediction method to improve the discovery of novel…

Provides a web-based prediction method to improve the discovery of novel caspase-3 substrates in human proteome. ScreenCap3 is based on a compilation of caspase-3 cleavage sites from the literature,…

PeptideMap
Web

PeptideMap

A tool for finding modifications on polypeptide sequences. The modifications…

A tool for finding modifications on polypeptide sequences. The modifications can be affecting single amino acids (e.g. phosphorylation or oxidation) or cross-linking two amino acids (e.g. disulfide…

CASVM
Web

CASVM

A web server for predicting caspase cleavage sites on protein sequences based…

A web server for predicting caspase cleavage sites on protein sequences based on the SVM algorithms. The server can be used for predicting non-canonical caspase substrate cleavage sites. We have also…

Motifs tree
Web

Motifs tree

Predictors for initiator methionine cleavage (IMC) and Nα-terminal acetylation…

Predictors for initiator methionine cleavage (IMC) and Nα-terminal acetylation (N-Ac).

PEPS
Desktop

PEPS Prediction of Endopeptidase Substrates

Uses individual rule-based endopeptidase cleavage site scoring matrices (CSSM).…

Uses individual rule-based endopeptidase cleavage site scoring matrices (CSSM). The efficiency of PEPS in predicting putative caspase 3, cathepsin B and cathepsin L cleavage sites is demonstrated in…

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