CLIFinder statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CLIFinder

Tool usage distribution map

This map represents all the scientific publications referring to CLIFinder per scientific context
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Associated diseases


Popular tool citations

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CLIFinder specifications


Unique identifier OMICS_23084
Name CLIFinder
Alternative name Chimeric LIne Finder
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes




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  • person_outline Catherine Vaurs-Barriere

Publication for Chimeric LIne Finder

CLIFinder citation


International Congress on Transposable elements (ICTE 2016) in Saint Malo: mobile elements under the sun of Brittany

PMCID: 5072296
DOI: 10.1186/s13100-016-0075-7

[…] tatus not only favors LINE-1 transcription, but also allows the formation of LINE-1 chimeric transcripts (LCTs) generated from the LINE-1 antisense promoter. Based on a dedicated bioinformatics tool, CLIFinder, her laboratory identified in the genome of 13 gliomas and 3 controls brains a total of 3000 chimeras composed of LINE-1 5′UTR followed by a unique adjacent sequence. Most but not all of the […]

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CLIFinder institution(s)
GReD, Université Clermont Auvergne, CNRS, INSERM, Clermont-Ferrand, France
CLIFinder funding source(s)
Supported by the Plan Cancer-INSERM [CS14085CS], ARC [SFI20121205549], the Auvergne Region and the Fonds Européen de Développement Régional (FEDER).

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