ClinQC specifications


Unique identifier OMICS_11111
Name ClinQC
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Some raw reads.
Input format FASTQ
Output data A QC summary table, files including reads and a QC report.
Output format FASTQ
Biological technology Illumina, Life Technologies, Roche
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, Perl, Python
Parallelization CUDA
License GNU Lesser General Public License version 3.0
Computer skills Advanced
Version 1.1
Stability Stable
Requirements biopython, bioperl, AlienTrimmer, TraceTuner, FASTQC, PRINSEQ
Maintained Yes


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  • person_outline Ram Viy Pandey <>
  • person_outline Andreas Weinhausel <>
  • person_outline Albert Kriegner <>
  • person_outline Stephan Pabinger <>

Additional information

Publication for ClinQC

ClinQC institution(s)
Health & Environment Department, Molecular Diagnostics, AIT Austrian Institute of Technology GmbH, Vienna, Austria; Institut für Populationsgenetik, Vetmeduni Vienna, Vienna, Austria
ClinQC funding source(s)
Supported by the Austrian Institute of Technology (AIT).

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