clipcrop statistics

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Citations per year

Citations chart

Popular tool citations

chevron_left Structural variant detection CNV detection CNV detection Duplication detection Inversion detection chevron_right
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Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

clipcrop specifications


Unique identifier OMICS_00310
Name clipcrop
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format SAM
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
shrimp2, bwa
Maintained Yes


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Publication for clipcrop

clipcrop in publication

PMCID: 4315576
PMID: 25646624
DOI: 10.1371/journal.pone.0116680

[…] above multi-exon deletion encompassing exons 15–21 could be precisely predicted from ngs cnv data. interestingly, combining this depth of coverage detection method with a split read approach using clipcrop, 332 reads were obtained which supported a breakpoint in exon 15 (). a smith-waterman alignment of the unmapped part of the spilt reads against the entire dna sequence of pkd1 found the best […]

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clipcrop institution(s)
Human Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan
clipcrop funding source(s)
Supported by Human Genome Center, Institute of Medical Science, University of Tokyo.

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