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Aims to characterize the regulatory networks between RNA binding proteins (RBPs) and various RNA transcript classes by integrating large amounts of CLIP-seq (including HITS-CLIP, PAR-CLIP and iCLIP as variations) data sets. CLIPdb 1.0 consistently annotated the CLIP-seq data sets and RBPs, and provides a user-friendly interface for quick navigation of the CLIP-seq data.

Restrictions to use:
None
Programming languages:
Javascript, PHP
Database support:
Yes
Database management system:
MySQL
Version:
CLIPdb version 1.0
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Maintainer

  • Zhi J. Lu <zhilu at tsinghua.edu.cn>

Institution(s)

MOE Key Laboratory of Bioinformatics, Center for Synthetic and Systems Biology and Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China

  • (Yang et al., 2015) CLIPdb: a CLIP-seq database for protein-RNA interactions. BMC genomics.
    PMID: 25652745
  • Animals
    • Caenorhabditis elegans
    • Homo sapiens
    • Mus musculus
  • Fungi
    • Saccharomyces cerevisiae

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