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CLIPZ | A database and analysis environment for experimentally determined binding sites of RNA-binding proteins


Allows to analyse binding sites of RNA-binding proteins. CLIPZ is a database and an analysis environment which supports the automatic functional annotation of short reads resulting primarily from crosslinking and immunoprecipitation experiments (CLIP) performed with RNA-binding proteins to identify the binding sites of these proteins. The software allows users to upload their own sequence data sets while being able to limit the access to these data to specific users.

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CLIPZ classification

CLIPZ specifications

Unique identifier:
Restrictions to use:
Web user interface
Computer skills:

CLIPZ support


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Biozentrum, University of Basel and Swiss Institute of Bioinformatics, Basel, Switzerland

Funding source(s)

Supported by ProDoc program of the Swiss National Science Foundation [Grants PDAMP3_127218 and PDFMP3_123123] and Swiss Institute of Bioinformatics.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.