Clockstar specifications


Unique identifier OMICS_13192
Name Clockstar
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data ClockstaR requires two forms of input: the sequence alignments and an estimate of the tree topology.
Input format FASTA, NEWICK
Output data ClockstaR returns a folder with the results of the analysis. It includes a file with the partition assignments at the optimal value of k, tables with the sBSDmin and tree scaling factors (s) and two files containing a dendrogram of sBSDmin, a plot of the Gap statistic and the partition assignments for values of k from k = 1 to k = N−1
Output format PDF, TXT
Operating system Unix/Linux
Programming languages R
License GNU General Public License version 3.0
Computer skills Advanced
Version 2.0.1
Stability Stable
Maintained Yes



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  • person_outline Sebastiàn Duchêne <>

Publication for Clockstar

Clockstar institution(s)
School of Biological Sciences, University of Sydney, Sydney, NSW, Australia
Clockstar funding source(s)
This work was supported by the Australian Research Council.

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