Clockstar specifications

Unique identifier:
OMICS_13192
Interface:
Command line interface
Input data:
ClockstaR requires two forms of input: the sequence alignments and an estimate of the tree topology.
Output data:
ClockstaR returns a folder with the results of the analysis. It includes a file with the partition assignments at the optimal value of k, tables with the sBSDmin and tree scaling factors (s) and two files containing a dendrogram of sBSDmin, a plot of the Gap statistic and the partition assignments for values of k from k = 1 to k = N−1
Operating system:
Unix/Linux
License:
GNU General Public License version 3.0
Version:
2.0.1
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTA, NEWICK
Output format:
PDF, TXT
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable

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Clockstar distribution

download

Clockstar support

Documentation

Maintainer

  • Sebastiàn Duchêne <>

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Publications

Institution(s)

School of Biological Sciences, University of Sydney, Sydney, NSW, Australia

Funding source(s)

This work was supported by the Australian Research Council.

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