ClonalFrame specifications

Information


Unique identifier OMICS_14623
Alternative name ClonalFrameML
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.2
Stability Stable
Requirements C++ compiler, R, ape, phangorn
Maintained Yes

Taxon


  • Eubacteria

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Versioning


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Documentation


Maintainer


  • person_outline Xavier Didelot <>

Additional information


A version called ClonalFrameML is available for bacterial genome at https://github.com/xavierdidelot/clonalframeml

ClonalFrame articles

ClonalFrame institution(s)
Department of Infectious Disease Epidemiology, Imperial College, London, UK; Nuffield Department of Medicine, University of Oxford, John Radcliffe Hospital, Oxford, UK; Wellcome Trust Centre for Human Genetics, Oxford, UK
ClonalFrame funding source(s)
This work was supported by the National Institute for Health Research through Health Protection Research Unit funding, a Sir Henry Dale Fellow, jointly funded by the Wellcome Trust and the Royal Society (Grant 101237/Z/13/Z), the Oxford NIHR Biomedical Research Centre, the UKCRC Modernising Medical Microbiology Consortium, the UKCRC Translational Infection Research Initiative supported by the Medical Research Council, the Biotechnology and Biological Sciences Research Council and the National Institute for Health Research on behalf of the UK Department of Health (Grant G0800778) and the Wellcome Trust (Grant 087646/Z/08/Z).

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