CLONET statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CLONET

Tool usage distribution map

This map represents all the scientific publications referring to CLONET per scientific context
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Associated diseases


Popular tool citations

chevron_left Tumor purity and heterogeneity estimation chevron_right
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CLONET specifications


Unique identifier OMICS_07304
Alternative name CLONality Estimate in Tumors
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License MIT License
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes


No version available

Publication for CLONality Estimate in Tumors

CLONET citations


Development and validation of a whole exome sequencing test for simultaneous detection of point mutations, indels and copy number alterations for precision cancer care

PMCID: 5539963
PMID: 28781886
DOI: 10.1038/npjgenmed.2016.19

[…] e sections for assessing sample quality and neoplastic content, enrichment of tumour samples by macrodissection and evaluation of the run QC metrics. Tumour purity is also assessed computationally by CLONET, allowing more accurate estimation of tumour purity and ploidy in the tumour samples, especially in cases of low tumour burden. In addition, to make review of the EXaCT-1 data effective and acc […]


Divergent clonal evolution of castration resistant neuroendocrine prostate cancer

Nat Med
PMCID: 4777652
PMID: 26855148
DOI: 10.1038/nm.4045

[…] To determine the copy number landscape of a tumor sample, allele-specific copy number analysis was applied within the CLONET framework. In a 100% pure tumor sample, the empirical distribution of the AFs within a genomic segment reflects the aggregated signal from multiple cell populations. If a segment S is copy numb […]

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CLONET institution(s)
Demichelis Lab - University of Trento, Italy

CLONET review

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the manual is simple, the input file description is very little, you must learn other software, such as segseq .It is very hard to understand the result files , because there is not more decrition.