Contributes self-developed plots for the descriptive comparative investigation of immune repertoires. ClonoPlot allows the visualization of observations in comparative B cell receptors (BCR) and T cell receptors (TCR) repertoire analysis. It removes any requirement for users to become familiar with the programming language R in order to create high-quality figures. The tool can be adapted by user to the latest developments in the field or incorporate additional features based on their existing in-house expertise.

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ClonoPlot classification

ClonoPlot specifications

Software type:
Package
Restrictions to use:
None
Programming languages:
Java, R
Computer skills:
Medium
Interface:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0
Stability:
Stable

ClonoPlot support

Documentation

Credits

Publications

  • ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface.
    Published in: 2017
    DOI: 10.1186/s12859-017-1575-2

Institution(s)

Institute of Anatomy, Lübeck, Germany; Institute for Software Engineering and Programming Languages, Lübeck, Germany; Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock, Germany

Funding source(s)

Supported by the Excellence Cluster Inflammation at Interfaces EXC306; the SFB 654 from the German Research Foundation; the European Union’s Horizon 2020 research and innovation programme under Grant agreement No 633589 and by EU COST "cHiPSet" (IC1406).

Link to literature

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