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ClonoPlot | Immune repertoire analysis from raw files to publication figures with graphical user interface

Contributes self-developed plots for the descriptive comparative investigation of immune repertoires. ClonoPlot allows the visualization of observations in comparative B cell receptors (BCR) and T cell receptors (TCR) repertoire analysis. It removes any requirement for users to become familiar with the programming language R in order to create high-quality figures. The tool can be adapted by user to the latest developments in the field or incorporate additional features based on their existing in-house expertise.

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ClonoPlot classification

ClonoPlot specifications

Unique identifier:
Graphical user interface
Operating system:
Unix/Linux, Mac OS, Windows
GNU General Public License version 3.0
Software type:
Restrictions to use:
Programming languages:
Java, R
Computer skills:

ClonoPlot distribution


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ClonoPlot support


  • Anke Fähnrich <>


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Institute of Anatomy, Lübeck, Germany; Institute for Software Engineering and Programming Languages, Lübeck, Germany; Institute for Biostatistics and Informatics in Medicine and Ageing Research, Rostock, Germany

Funding source(s)

Supported by the Excellence Cluster Inflammation at Interfaces EXC306; the SFB 654 from the German Research Foundation; the European Union’s Horizon 2020 research and innovation programme under Grant agreement No 633589 and by EU COST "cHiPSet" (IC1406).

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