CloudAligner statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Read alignment chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

CloudAligner specifications

Information


Unique identifier OMICS_00656
Name CloudAligner
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Parallelization MapReduce
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Tung Nguyen <>

Publication for CloudAligner

CloudAligner in publications

 (3)
PMCID: 5537105
PMID: 28794828
DOI: 10.1016/j.csbj.2017.07.002

[…] access to software without the need to manage the underlying hardware and software resources. there have been many bioinformatics saas solutions to perform tasks ranging from short-read alignment (cloudaligner and sparkbwa ), variant calling (halvade and churchill ) and rna-seq analysis (oqtans and falco ). in platform as a service, users are provided with a platform for developing […]

PMCID: 4709609
PMID: 26839887
DOI: 10.1155/2015/807407

[…] are generally virtual machines (vms) in public cloud environments. a simple mapreduce model deployed on the vm based computing environment is shown in ., next-generation sequencing (ngs) tools like cloudaligner [], cloud burst [], seqmapreduce [], and crossbow [] adopt the hadoop framework. the major drawback of these alignment tools is that they are short read aligners. the short read aligners […]

PMCID: 4179624
PMID: 25288881
DOI: 10.4137/CIN.S13779

[…] easier to co-localize data and parallel computation. it has been well adopted in the field of bioinformatics, including a few sequence alignment tools such as cloudburst, crossbow, seqmapreduce, and cloudaligner., new findings in biological sciences usually come out of multi-step data pipelines, also known as work-flows. biologists already used a few workflow tools in the pre-cloud […]


To access a full list of publications, you will need to upgrade to our premium service.

CloudAligner institution(s)
Computer Science Department, Wayne State University, US

CloudAligner reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CloudAligner