CloudDOE specifications


Unique identifier OMICS_10173
Name CloudDOE
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Parallelization MapReduce
License Apache License version 2.0
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes


No version available


  • person_outline Yu-Jung Chang

Publication for CloudDOE

CloudDOE citations


Big Data Application in Biomedical Research and Health Care: A Literature Review

PMCID: 4720168
PMID: 26843812
DOI: 10.4137/BII.S31559

[…] owtie, Velvet, FASTX) and programing libraries (eg, BioJava, R, Bioconductor).Deploying the Hadoop cloud platform can be a big challenge for researchers who do not have a computer science background. CloudDOE is a software package that provides a simple interface for deploying the Hadoop cloud because the Hadoop platform is often too complex for scientists without computer science expertise and/or […]


Subset selection of high depth next generation sequencing reads for de novo genome assembly using MapReduce framework

BMC Genomics
PMCID: 4682372
PMID: 26678408
DOI: 10.1186/1471-2164-16-S12-S9

[…] aset characteristics and ALLPATHS-LG characteristics affect the results and then improve the subset selection methods. In addition, we plan to integrate the proposed subset selection methods into the CloudDOE software [] to improve usability. […]

CloudDOE institution(s)
Institute of Information Science, Academia Sinica, Taipei, Taiwan

CloudDOE reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CloudDOE