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CloudDOE specifications


Unique identifier OMICS_10173
Name CloudDOE
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Parallelization MapReduce
License Apache License version 2.0
Computer skills Advanced
Stability Stable
High performance computing Yes
Maintained Yes


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  • person_outline Yu-Jung Chang

Publication for CloudDOE

CloudDOE citation


Subset selection of high depth next generation sequencing reads for de novo genome assembly using MapReduce framework

BMC Genomics
PMCID: 4682372
PMID: 26678408
DOI: 10.1186/1471-2164-16-S12-S9

[…] characteristics and allpaths-lg characteristics affect the results and then improve the subset selection methods. in addition, we plan to integrate the proposed subset selection methods into the clouddoe software [] to improve usability., in order to handle large-scale data faster, we developed several tools in java for preprocessing and analyzing data using mapreduce framework. we developed […]

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CloudDOE institution(s)
Institute of Information Science, Academia Sinica, Taipei, Taiwan

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