ClubSub-P specifications


Unique identifier OMICS_01619
Name ClubSub-P
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for ClubSub-P

ClubSub-P in publications

PMCID: 3953254
PMID: 24369174
DOI: 10.1074/jbc.M113.513275

[…] only covers the c-terminal domain of the lipoprotein. no functional data are available for either of the paralogous proteins., sadb was predicted to be an inner membrane lipoprotein by lipop and clubsub-p (, ) due to an aspartic acid in the +2 position of the predicted cleavage site. to verify the prediction, we overexpressed sadb from a plasmid. very mild induction was used to avoid […]

PMCID: 3582582
PMID: 23013516
DOI: 10.1186/1471-2164-13-510

[…] for biotechnology applications., in a previous study [] to annotate the subcellular localizations (scls) for the proteomes of 607 gram-negative bacteria, we developed the program/database clubsub-p, in which we used programs like cello [], psortb [] and hhomp [] to annotate omps. cello [] and psortb [] use support vector classifiers to annotate different scls of query sequences […]

PMCID: 3403877
PMID: 22540951
DOI: 10.1186/1471-2105-13-63

[…] we compared the confidently predicted putative omps from the avian strain genome obtained by our prediction framework with those predicted by a recently published subcellular localization predictor clubsub-p which was developed based on cluster-based and consensus prediction methods []. fifty-eight proteins were predicted by the clubsub-p program including 34 inner or outer membrane […]

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ClubSub-P institution(s)
Department I Protein Evolution, Max Planck Institute for Developmental Biology Tübingen, Germany

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