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Number of citations per year for the bioinformatics software tool ClubSub-P
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Protocols

ClubSub-P specifications

Information


Unique identifier OMICS_01619
Name ClubSub-P
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for ClubSub-P

ClubSub-P citations

 (3)
library_books

A Trimeric Lipoprotein Assists in Trimeric Autotransporter Biogenesis in Enterobacteria*

2013
PMCID: 3953254
PMID: 24369174
DOI: 10.1074/jbc.M113.513275

[…] SadB was predicted to be an inner membrane lipoprotein by LipoP and ClubSub-P (, ) due to an aspartic acid in the +2 position of the predicted cleavage site. To verify the prediction, we overexpressed sadB from a plasmid. Very mild induction was used to avoid overload […]

call_split

Is the C terminal insertional signal in Gram negative bacterial outer membrane proteins species specific or not?

2012
BMC Genomics
PMCID: 3582582
PMID: 23013516
DOI: 10.1186/1471-2164-13-510
call_split See protocol

[…] In a previous study [] to annotate the subcellular localizations (SCLs) for the proteomes of 607 Gram-negative bacteria, we developed the program/database ClubSub-P, in which we used programs like CELLO [], PSORTb [] and HHomp [] to annotate OMPs. CELLO [] and PSORTb [] use support vector classifiers to annotate different SCLs of query sequences an […]

call_split

Predicting the outer membrane proteome of Pasteurella multocida based on consensus prediction enhanced by results integration and manual confirmation

2012
BMC Bioinformatics
PMCID: 3403877
PMID: 22540951
DOI: 10.1186/1471-2105-13-63
call_split See protocol

[…] n.We compared the confidently predicted putative OMPs from the avian strain genome obtained by our prediction framework with those predicted by a recently published subcellular localization predictor ClubSub-P which was developed based on cluster-based and consensus prediction methods []. Fifty-eight proteins were predicted by the ClubSub-P program including 34 inner or outer membrane lipoproteins […]


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ClubSub-P institution(s)
Department I Protein Evolution, Max Planck Institute for Developmental Biology Tübingen, Germany

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