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|Interface||Graphical user interface|
|Restrictions to use||Academic or non-commercial use|
|Operating system||Unix/Linux, Mac OS, Windows|
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- person_outline Jérôme Galon
Publication for ClueGO
Integrated analysis of hepatic mRNA and miRNA profiles identified molecular networks and potential biomarkers of NAFLD
[…] e most significant modules were identified with the plug-in MCODE of Cytoscape with a cutoff MCODE score of >5. The enriched pathway interaction networks were constructed using the Cytoscape plug-ins ClueGO and CluePedia. Negatively correlated, differentially expressed miRNA-mRNA pairs were selected for screening, and the regulatory networks were constructed and visualized by Cytoscape software. S […]
Whole genome and transcriptome analysis reveal adaptive strategies and pathogenesis of Calonectria pseudoreteaudii to Eucalyptus
[…] ets of proteins from UniProt, Pfam-database of protein families and KEGG-database of metabolic pathways. GO analysis of protein sequences were conducted by Blast2GO . GO enrichment was performed by ClueGO with P value < 0.05 . […]
Whole genome de novo sequencing reveals unique genes that contributed to the adaptive evolution of the Mikado pheasant
[…] ining an equal number of PSGs with an FDR <0.05 for the branch-site model. For massively enriched GO terms with similar functions, CateGOrizer  was used to classify the genes into basic categories. ClueGO  with the hypergeometric test and a Bonferroni adjustment were performed to enrich the KEGG pathways . […]
Shape Shifted Red Blood Cells: A Novel Red Blood Cell Stage?
[…] ClueGO , CluePedia  and Cytoscape  plugins were used to performed Gene Ontology (GO) and pathway annotation networks of the expressed genes and proteins pathway enrichment analysis. The GO Biolo […]
Nuclear receptor NR2F6 inhibition potentiates responses to PD L1/PD 1 cancer immune checkpoint blockade
[…] testing based on false discovery rate (FDR) using the Benjamini−Hochberg approach. Analysis and visualization of Gene Ontology terms associated with differentially expressed genes was performed using ClueGO. Both groups of genes (up and downregulated, p-value <0.05) were used as dual input for GO analysis. The biological terms are grouped together based on their shared genes where the similarity b […]
An Integrated Proteomics and Bioinformatics Approach Reveals the Anti inflammatory Mechanism of Carnosic Acid
[…] ry Relationships database (PANTHER). The signaling pathway enrichment analysis was performed using the Kyoto Encyclopedia of Genes and Genomes (KEGG), REACTOME pathway, and Wiki pathway database from ClueGO program, a plug-in Cytoscape software (v.3.5.1). […]
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