CluePedia pipeline

CluePedia specifications


Unique identifier OMICS_04143
Name CluePedia
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Requirements Cytoscape
Maintained Yes


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  • person_outline Bernhard Mlecnik <>

Publication for CluePedia

CluePedia citations

PMCID: 5465539

[…] an adjusted p-value <0.05 (q value <0.05) in deseq analysis were assigned as differentially expressed genes (degs)., gene ontology (go) annotation of the genes was performed using cluego and cluepedia [20, 21]. in go enrichment analysis, only categories with a low p-value (p < 0.05) were considered as enriched in the network as determined by two-sided hypergeometric statistical tests […]

PMCID: 5345195

[…] with the funrich tool [81], exploiting the extracellular vesicles database [52]. next, we performed gene ontology and pathway analysis using a web based tool, enrichr [56], as well as cluego and cluepedia [14] implemented in cytoscape and supplemented with enrichment analysis in wgcna. complementary to these analyses, our functional interpretation of gene modules exploited several biological […]

CluePedia institution(s)
INSERM, Laboratory of Integrative Cancer Immunology, Paris, France

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