CluSim statistics

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Citations per year

Citations chart

Popular tool citations

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Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

CluSim specifications


Unique identifier OMICS_31745
Name CluSim
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Alexander Gates <>
  • person_outline Yong-Yeol Ahn <>

Additional information

Publication for CluSim

CluSim in publication

PMCID: 2646238
PMID: 19208193
DOI: 10.1186/1471-2105-10-S2-S5

[…] is assigned a score by linear combination of features. specifically, sentence score s is calculated as:, s = w1clusim + w2ngene + w3ctword + w4tpword + w5l + w6recency , • cluster representation (clusim). the top five descriptive features (a set of mesh, go terms and/or text words) for each gene cluster from the previous step are used as this ranking measure., • gene relations (ngene). […]

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CluSim institution(s)
Center for Complex Networks Research, Northeastern University, Boston, MA, USA; Department of Informatics, Indiana University, Bloomington, IN, USA; Program in Cognitive Science, Indiana University, Bloomington, IN, USA
CluSim funding source(s)
Supported in part by the Defense Advanced Research Projects Agency (DARPA), contract W911NF-17-C-0094.

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