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CLUSS specifications

Information


Unique identifier OMICS_05922
Name CLUSS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Maintained Yes

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No version available

Publication for CLUSS

library_books

CLUSS: clustering of protein sequences based on a new similarity measure.

2007 BMC Bioinformatics
PMCID: 1976428
PMID: 17683581
DOI: 10.1186/1471-2105-8-286

CLUSS citations

 (6)
library_books

Functional Annotation of Conserved Hypothetical Proteins from Haemophilus influenzae Rd KW20

2013
PLoS One
PMCID: 3877243
PMID: 24391926
DOI: 10.1371/journal.pone.0084263

[…] predicted fold in hp is also present in the motif generated functional annotations. while in motif discovery using meme suite we first cluster the protein sequences of hps into clusters using cluss , online server and then submit the clustered sequences in the meme suite server. meme suite server identified three motif sites in the clustered hps by default. the mast module of meme suite […]

library_books

Genome Wide Comparative Gene Family Classification

2010
PLoS One
PMCID: 2955529
PMID: 20976221
DOI: 10.1371/journal.pone.0013409

[…] systems (fedora core 7, kernel 2.6.23.17–88, gcc 4.1.2) , or the program requires a license . thus, the following seven programs were selected for performance assessment (): tribe-mcl , gspc , cluss , force , mc-upgma , homoclust , and blastclust ., evaluated methods are listed first and the two resulting sub-lists are then sorted chronologically by publication date (older methods first). […]

library_books

Classification of Protein Kinases on the Basis of Both Kinase and Non Kinase Regions

2010
PLoS One
PMCID: 2939887
PMID: 20856812
DOI: 10.1371/journal.pone.0012460

[…] lms for local matching score, to assess local similarity between sequences without the use of sequence alignment. the principle is outlined in . it is in essence similar to what is proposed in the cluss software , but we essentially introduced modifications in the normalization scheme., the principle is to detect identical short patterns of length that are common to two sequences and . […]

library_books

The chitobiose transporter, chbC, is required for chitin utilization in Borrelia burgdorferi

2010
BMC Microbiol
PMCID: 2845121
PMID: 20102636
DOI: 10.1186/1471-2180-10-21

[…] that they could use chitotriose and chitohexose in the absence of free glcnac., in another set of growth experiments, rabbit serum was replaced with a lipid supplement previously described by cluss et al [] to rule out the possibility of residual chitinase activity in boiled serum that was not detected by the artificial fluorescent substrates. cells were subcultured at least twice […]

library_books

Partially supervised protein subclass discovery with simultaneous annotation of functional residues

2009
BMC Struct Biol
PMCID: 2777906
PMID: 19857261
DOI: 10.1186/1472-6807-9-68

[…] csi mixtures., in order to assess the performance of our method in comparison to other state-of-the-art procedures, we computed clusterings for all the data sets using five different methods. the cluss 3.0 [,] algorithm is a tree-based clustering method which does not rely on an alignment. in the original papers cluss has been compared with favorable results to a variety of protein clustering […]

library_books

Normalized Cut Group Clustering of Resting State fMRI Data

2008
PLoS One
PMCID: 2291558
PMID: 18431486
DOI: 10.1371/journal.pone.0002001

[…] of the cluster-similarity values across the individual clustermaps. more formally, weight w(i,j) of edge e(i,j) between voxel i and j in ggrp, was defined aswith n the number of subjects and cluss(i,j) being 1 if voxel i and j were in the same cluster in subject s and 0 otherwise. this definition of the weights of the group graph expressed between subject cluster-similarity in such a way […]


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CLUSS institution(s)
Département d'informatique, Faculté des Sciences, Université de Sherbrooke, Sherbrooke, QC, Canada

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