Clust pipeline

Clust specifications


Unique identifier OMICS_24103
Name Clust
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 1.4.0
Stability Stable
Requirements numpy, scipy, matplotlib, sklearn, sompy, joblib, portalocker
Maintained Yes



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  • person_outline Steven Kelly <>

Publication for Clust

Clust citations

PMCID: 4122925

[…] euryarchaeota, thaumarchaeota, nanoarchaeota, korarchaeota, and unclassified archaea) was calculated for each fosmid and the resulting data matrix was processed with a quality cluster method (qt_clust) (heyer et al. 1999) with mev (multiexperiment viewer;, last accessed june 25, 2014) (saeed et al. 2003). this provided a preliminary ascription of fosmids […]

PMCID: 3382433

[…] example, hierarchical clustering produces a tree of clusters, which we simply "slice" at a particular depth to determine a list of clusters., to generate results that were used in scoring, cast, qt clust and som were run with mev 4.1 [37]. when running the cast method, we selected threshold values evenly distributed between 0.5 and 1.0. for qt clust, we selected maximum cluster diameters evenly […]

Clust institution(s)
Department of Plant Sciences, University of Oxford, South Parks Road, Oxford, UK

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