Clustal Omega statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Clustal Omega
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Clustal Omega specifications

Information


Unique identifier OMICS_00972
Name Clustal Omega
Alternative name ClustalOmega
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_00972
Name Clustal Omega
Alternative name ClustalOmega
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for Clustal Omega

library_books

Clustal omega.

2014 Curr Protoc Bioinformatics
PMID: 25501942

Clustal Omega citations

 (1497)
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Bat Caliciviruses and Human Noroviruses Are Antigenically Similar and Have Overlapping Histo Blood Group Antigen Binding Profiles

2018
MBio
PMCID: 5964351
DOI: 10.1128/mBio.00869-18
call_split See protocol

[…] ID: 2OBT) () and HuNoV GII.4.2012/NSW0514 bound to type A trisaccharide (PDB ID: 4WZT) () and MNV (PDB ID: 3LQE) structures from the Protein Data Bank. The amino acid sequences were aligned using the Clustal Omega platform on the Bioinformatics Toolkit from the Max Planck Institute (, ). The predicted tertiary structure of the aligned sequence was determined by the use of the Modeller platform fro […]

call_split

Complete mitochondrial and rDNA complex sequences of important vector species of Biomphalaria, obligatory hosts of the human infecting blood fluke, Schistosoma mansoni

2018
Sci Rep
PMCID: 5943310
PMID: 29743617
DOI: 10.1038/s41598-018-25463-z
call_split See protocol

[…] Sequence alignments and percent identity of nucleotides (nt) and amino acids (aa) were determined using Clustal Omega (https://www.ebi.ac.uk/Tools/msa/clustalo/). Heat-maps of pair-wise sequence identities were generated using the R package ggplot2. Evolutionary rate including synonymous, non-synonymous […]

call_split

The orphan germinant receptor protein GerXAO (but not GerX3b) is essential for L alanine induced germination in Clostridium botulinum Group II

2018
Sci Rep
PMCID: 5935672
PMID: 29728678
DOI: 10.1038/s41598-018-25411-x
call_split See protocol

[…] X genes in the genomes of C. botulinum Group II strains, genome sequences were re-annotated using Prokka version 1.12. Roary version 3.5.7 was used for comparative genomics. Alignments were made with Clustal omega and MEGA version 6.0 and used for generation of phylogenetic trees using the Neighbour Joining option. Figtree was used for annotation of phylogenetic trees. Conserved domains were ident […]

library_books

Genome wide analysis of the NAC transcription factor family and their expression during the development and ripening of the Fragaria × ananassa fruits

2018
PLoS One
PMCID: 5933797
PMID: 29723301
DOI: 10.1371/journal.pone.0196953

[…] rachypodium distachyon [] and ethylene-responsive signaling in banana []. Other studies have assigned a wider range of functions to the NAC proteins using the same approach [, , , , ]. Thus, we run a Clustal Omega alignment with all NAC protein sequences from Arabidopsis along the six developmental and ripening related NAC TFs from strawberry to predict their functions. The proteins functions obta […]

call_split

Oral Microbiota Community Dynamics Associated With Oral Squamous Cell Carcinoma Staging

2018
Front Microbiol
PMCID: 5943489
PMID: 29774014
DOI: 10.3389/fmicb.2018.00862
call_split See protocol

[…] fSeq V14.5, HOMD RefSeq Extended V1.1, modified GreenGeneGold, and the NCBI's Microbial 16S set (Al-Hebshi et al., , ). Taxonomy classification was also assigned according to the Greengenes database. Clustal Omega software was used to construct phylogenetic trees from the representative sequences of the OTUs. The α-diversity (e.g., observed OTU numbers, Chao index, Simpson index, and Shannon index […]

call_split

Antibodies to the Glycoprotein GP2 Subunit Cross React between Old and New World Arenaviruses

2018
PMCID: 5932378
PMID: 29720525
DOI: 10.1128/mSphere.00189-18
call_split See protocol

[…] ated using ExPASy (Swiss Institute of Bioinformatics), and amino acid sequences were extracted and labeled with short names as indicated below. A multiple sequence alignment (MSA) was generated using Clustal Omega, and the alignment file was analyzed using Jalview. Percent identity per position was then determined in Jalview as the percentage of utilized viral sequences that share the Lassa virus […]


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Clustal Omega institution(s)
School of Medicine and Medical Science, Conway Institute, University College Dublin, Ireland

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