Clustal W statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Clustal W
info

Tool usage distribution map

info info

Associated diseases

This word cloud represents Clustal W usage per disease context
info

Popular tool citations

chevron_left Phylogenetic inference Multiple nucleotide sequence alignment Multiple amino acid sequence alignment chevron_right
Want to access the full stats & trends on this tool?

Protocols

Clustal W specifications

Information


Unique identifier OMICS_02562
Name Clustal W
Alternative names Clustal X, ClustalX, ClustalW, ClustalX2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Clustal W/Clustal X Team

Information


Unique identifier OMICS_02562
Name Clustal W
Alternative names Clustal X, ClustalX, ClustalW, ClustalX2
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Clustal W/Clustal X Team

Publication for Clustal W

Clustal W citations

 (18441)
call_split

Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats

2018
Sci Rep
PMCID: 5958079
PMID: 29773850
DOI: 10.1038/s41598-018-26180-3
call_split See protocol

[…] Protein alignments were carried out using ClustalW default parameters. Plasmids were classified according to their relaxase proteins as described by Garcillán-Barcia et al.. MOB families and subfamilies were also defined as in Garcillán-Barci […]

call_split

Genetic diversity of PRRSV 1 in Central Eastern Europe in 1994–2014: origin and evolution of the virus in the region

2018
Sci Rep
PMCID: 5958080
PMID: 29773820
DOI: 10.1038/s41598-018-26036-w
call_split See protocol

[…] RRSV 1 Subtype 1 representing the full range of genetic diversity of this Subtype. Altogether 607 sequences were analyzed in the study (Supplementary Table). Sequence alignment was performed based on ClustalW (Geneious 10.1.3, Biomatters) and phylogenetic analysis using a Bayesian Markov chain Monte Carlo method in MrBayes v3.2. Detailed parameter settings and the principles of lineage definitions […]

library_books

AID/APOBEC like cytidine deaminases are ancient innate immune mediators in invertebrates

2018
Nat Commun
PMCID: 5956068
PMID: 29769532
DOI: 10.1038/s41467-018-04273-x

[…] each gene from each sea urchin, and the primer sequences were excluded for prior to the sequence alignments. The nucleotide sequences for each gene were first aligned within each S. purpuratus using CLUSTALW (www.genome.jp/tools/clustalw), and the dominant sequences corresponding to the two alleles were then selected for subsequently comparison between individual sea urchins. […]

call_split

Comparison of the genotypic and phenotypic properties of HIV 1 standard subtype B and subtype B/B′ env molecular clones derived from infections in China

2018
PMCID: 5955974
PMID: 29769530
DOI: 10.1038/s41426-018-0087-0
call_split See protocol

[…] Sequences were aligned using the ClustalW program in MEGA 6.06 software. Phylogenetic analysis was conducted using the neighbor-joining method. Glycosylation sites were predicted with the HIV-1 database online program N-GlycoSite (ht […]

library_books

Different clusters of Candidatus ‘Methanoperedens nitroreducens’ like archaea as revealed by high throughput sequencing with new primers

2018
Sci Rep
PMCID: 5955947
PMID: 29769540
DOI: 10.1038/s41598-018-24974-z

[…] The protein sequences were first aligned in Clustal X software and then the phylogenetic tree was built using the MEGA software (version 7.0.21) via the neighbour-joining method (1000 replicates). The previously reported M. nitroreducens genomi […]

library_books

Papain like and legumain like proteases in rice: genome wide identification, comprehensive gene feature characterization and expression analysis

2018
BMC Plant Biol
PMCID: 5952849
PMID: 29764367
DOI: 10.1186/s12870-018-1298-1

[…] Multiple sequence alignments of amino acid sequences were performed using Clustal X ver. 1.81 with the default multiple alignment parameters. Phylogenetic tree was generated with Phylip Ver. 3.68 using the Protpars method. Protein sequences of papain-like and LLCPs from A. […]


Want to access the full list of citations?
Clustal W institution(s)
The Conway Institute of Biomolecular and Biomedical Research, University College Dublin, Belfield, Dublin, Ireland

Clustal W reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Clustal W