Clustal W statistics
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Protocols
Clustal W specifications
Information
| Unique identifier | OMICS_02562 |
|---|---|
| Name | Clustal W |
| Alternative names | Clustal X, ClustalX, ClustalW, ClustalX2 |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
Versioning
No version available
Maintainer
- person_outline Clustal W/Clustal X Team
Information
| Unique identifier | OMICS_02562 |
|---|---|
| Name | Clustal W |
| Alternative names | Clustal X, ClustalX, ClustalW, ClustalX2 |
| Interface | Web user interface |
| Restrictions to use | None |
| Computer skills | Basic |
| Stability | Stable |
| Maintained | Yes |
Maintainer
- person_outline Clustal W/Clustal X Team
Publication for Clustal W
Clustal W and Clustal X version 2.0.
Clustal W citations
(18441)Comparative genomic analysis of Acinetobacter spp. plasmids originating from clinical settings and environmental habitats
[…] Protein alignments were carried out using ClustalW default parameters. Plasmids were classified according to their relaxase proteins as described by Garcillán-Barcia et al.. MOB families and subfamilies were also defined as in Garcillán-Barci […]
Genetic diversity of PRRSV 1 in Central Eastern Europe in 1994–2014: origin and evolution of the virus in the region
[…] RRSV 1 Subtype 1 representing the full range of genetic diversity of this Subtype. Altogether 607 sequences were analyzed in the study (Supplementary Table). Sequence alignment was performed based on ClustalW (Geneious 10.1.3, Biomatters) and phylogenetic analysis using a Bayesian Markov chain Monte Carlo method in MrBayes v3.2. Detailed parameter settings and the principles of lineage definitions […]
AID/APOBEC like cytidine deaminases are ancient innate immune mediators in invertebrates
[…] each gene from each sea urchin, and the primer sequences were excluded for prior to the sequence alignments. The nucleotide sequences for each gene were first aligned within each S. purpuratus using CLUSTALW (www.genome.jp/tools/clustalw), and the dominant sequences corresponding to the two alleles were then selected for subsequently comparison between individual sea urchins. […]
Comparison of the genotypic and phenotypic properties of HIV 1 standard subtype B and subtype B/B′ env molecular clones derived from infections in China
[…] Sequences were aligned using the ClustalW program in MEGA 6.06 software. Phylogenetic analysis was conducted using the neighbor-joining method. Glycosylation sites were predicted with the HIV-1 database online program N-GlycoSite (ht […]
Different clusters of Candidatus ‘Methanoperedens nitroreducens’ like archaea as revealed by high throughput sequencing with new primers
[…] The protein sequences were first aligned in Clustal X software and then the phylogenetic tree was built using the MEGA software (version 7.0.21) via the neighbour-joining method (1000 replicates). The previously reported M. nitroreducens genomi […]
Papain like and legumain like proteases in rice: genome wide identification, comprehensive gene feature characterization and expression analysis
[…] Multiple sequence alignments of amino acid sequences were performed using Clustal X ver. 1.81 with the default multiple alignment parameters. Phylogenetic tree was generated with Phylip Ver. 3.68 using the Protpars method. Protein sequences of papain-like and LLCPs from A. […]
Citations
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