clustComp statistics

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Associated diseases

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clustComp specifications

Information


Unique identifier OMICS_20557
Name clustComp
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output data Vectors indicating the supercluster each gene is allocated to a description of how initial clusters are arranged into superclusters.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.8.0
Stability Stable
Requirements
stats, graphics, BiocGenerics, Biobase, grDevices, RUnit, R(>=3.3), colonCA, sm
Maintained Yes

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Maintainer


  • person_outline Aurora Torrente <>

Publication for clustComp

clustComp in publication

PMCID: 4844213
PMID: 26727311
DOI: 10.1080/15592294.2015.1111504

[…] to interrogate the independence of mutation status, er status, and grade, and to generate a prediction model, which was utilized by the predict command in r for predicting variant pathogenicity. the clustcomp command from the clustercons r package was used to perform consensus clustering on β value of the 18 probes of all samples on the illumina 450k beadchip array. pearson's correlation […]


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clustComp institution(s)
Instituto Gregorio Millán, Departamento de Ciencia e Ingeniería de Materiales e Ingeniería Química, Universidad Carlos III de Madrid, Spain; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, UK
clustComp funding source(s)
Supported by Ramón Areces Foundation

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