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Cluster analysis software tools | Population genomics

A series of methods in population genetics use multilocus genotype data to assign individuals membership in latent clusters. These methods belong to a broad class of mixed-membership models, such as latent Dirichlet allocation used to analyze text…
pong
Desktop

pong

A freely available software package for post-processing output from clustering…

A freely available software package for post-processing output from clustering inference using population genetic data. pong combines a network-graphical approach for analyzing and visualizing…

CLUMPP
Desktop

CLUMPP CLUster Matching and Permutation Program

A program that deals with label switching and multimodality problems in…

A program that deals with label switching and multimodality problems in population-genetic cluster analyses. CLUMPP permutes the clusters output by independent runs of clustering programs such as…

DISTRUCT
Desktop

DISTRUCT

Provides a general method for visualizing estimated membership coefficients.…

Provides a general method for visualizing estimated membership coefficients. Subpopulations are represented as colours, and individuals are depicted as bars partitioned into coloured segments that…

Clumpak
Web

Clumpak Clustering Markov Packager Across K

Automates the post-processing of results of model-based population structure…

Automates the post-processing of results of model-based population structure analyses. For analysing multiple independent runs at a single K value, Clumpak identifies sets of highly similar runs,…

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