Cluster Flow specifications


Unique identifier OMICS_20860
Name Cluster Flow
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl, Python, R
License GNU General Public License version 3.0
Computer skills Advanced
Version 0.5
Stability Stable
Maintained Yes



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  • person_outline Max Kaller <>

Additional information

Publication for Cluster Flow

Cluster Flow in publication

PMCID: 5691353
PMID: 29048555
DOI: 10.1093/gigascience/gix099

[…] are followed. the system is already in use at european hospital georges pompidou (hegp) for cancer patients and has reduced the workload both for bioinformaticians and for molecular biologists., cluster flow [] is a workflow manager using command lines. the tool requires programming skills and is not appropriate to the typical clinician end user. knime4ngs [] is a graphical interface, […]

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Cluster Flow institution(s)
Department of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, Stockholm, Sweden; Bioinformatics Group, The Babraham Institute, Cambridge, UK; Science for Life Laboratory, School of Biotechnology, Division of Gene Technology, Royal Institute of Technology, Stockholm, Sweden
Cluster Flow funding source(s)
Supported by the Science for Life Laboratory and the National Genomics Infrastructure (NGI) as well as the Babraham Institute and the UK Biotechnology and Biological Sciences Research Council (BBSRC).

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