clusterExperiment specifications


Unique identifier OMICS_12352
Name clusterExperiment
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 2.0.2
Stability Stable
limma, methods, stats, RColorBrewer, parallel, graphics, testthat, S4Vectors, BiocStyle, grDevices, SummarizedExperiment, Rcpp, knitr, cluster, matrixStats, stringr, ape(>=5.0), phylobase, Rtsne, NMF, R(>=3.4.2), SingleCellExperiment, dendextend, howmany, locfdr, RSpectra, kernlab, HDF5Array(>=1.7.10), DelayedArray(>=0.5.31), scRNAseq, MAST
Maintained Yes


  • RSEC (Resampling-based Sequential Ensemble Cl




No version available



  • person_outline Elizabeth Purdom
  • person_outline Davide Risso

Publication for clusterExperiment

clusterExperiment institution(s)
Division of Biostatistics and Epidemiology, Weill Cornell Medicine, New York, NY, USA; Department of Statistics, UC Berkeley, Berkeley, CA, USA; Department of Molecular and Cell Biology, UC Berkeley, Berkeley, CA, USA; Berkeley Institute for Data Science, UC Berkeley, CA USA; Division of Biostatistics, UC Berkeley, Berkeley, CA, USA
clusterExperiment funding source(s)
Supported by National Institutes of Health grants U19 MH114830 and U01 MH105979, the Chan Zuckerberg Initiative DAF 2018-183201, and the ENS-CFM Data Science Chair.

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