Clustergrammer statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Clustergrammer
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Tool usage distribution map

This map represents all the scientific publications referring to Clustergrammer per scientific context
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Associated diseases

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Clustergrammer specifications

Information


Unique identifier OMICS_32017
Name Clustergrammer
Interface Web user interface
Restrictions to use None
Programming languages Javascript
License MIT License
Computer skills Basic
Version 1.5.2
Stability Stable
Maintained Yes

Download


github.png

Documentation


Maintainer


  • person_outline Avi Ma’ayan

Additional information


https://github.com/MaayanLab/clustergrammer https://github.com/MaayanLab/clustergrammer-widget https://clustergrammer.readthedocs.io/

Information


Unique identifier OMICS_32017
Name Clustergrammer
Software type Application/Script, Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.13.5
Stability Stable
Maintained Yes

Download


download.png
github.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Avi Ma’ayan

Additional information


https://github.com/MaayanLab/clustergrammer https://github.com/MaayanLab/clustergrammer-widget https://clustergrammer.readthedocs.io/

Publication for Clustergrammer

Clustergrammer citations

 (4)
library_books

Datasets2Tools, repository and search engine for bioinformatics datasets, tools and canned analyses

2018
Sci Data
PMCID: 5827688
PMID: 29485625
DOI: 10.1038/sdata.2018.23

[…] ts, generated from a dataset contained within a specific centralized data repository, and analyzed by a specific bioinformatics tool, gradually accumulate. Software tools such as GeneMANIA, Enrichr,, Clustergrammer, and L1000CDS2 provide users who submit gene signatures for analysis, or build interaction networks, with these tools, a persistent URL that can be shared with others. In addition to th […]

library_books

Gene3D: Extensive prediction of globular domains in proteins

2017
Nucleic Acids Res
PMCID: 5753370
PMID: 29112716
DOI: 10.1093/nar/gkx1069

[…] we have added another visualisation tool to the Gene3D website. This visualization tool displays the co-occurring domain families, for a given query domain family in a heatmap/matrix style, using the clustergrammer JavaScript software (https://github.com/MaayanLab/clustergrammer). These co-occurrence matrices, can get quite large, but the website offers various filters and the clustergrammer libra […]

library_books

Clustergrammer, a web based heatmap visualization and analysis tool for high dimensional biological data

2017
Sci Data
PMCID: 5634325
PMID: 28994825
DOI: 10.1038/sdata.2017.151

[…] Developers can use Clustergrammer’s two core libraries Clustergrammer-JS and Clustergrammer-PY as a visualization toolkit to generate visualizations for their own projects. Clustergrammer-JS is the front-end JavaScript […]

library_books

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

2016
Nucleic Acids Res
PMCID: 4987924
PMID: 27141961
DOI: 10.1093/nar/gkw377

[…] One of the new features of Enrichr is the visualization of the enrichment results as clustergrams. This is achieved using Clustergrammer (https://github.com/MaayanLab/clustergrammer), an independent data visualization module we developed for multiple projects. Clustergrammer provides dynamic visualizations of Enrichr's e […]


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Clustergrammer institution(s)
Department of Pharmacological Sciences, Mount Sinai Center for Bioinformatics, BD2K-LINCS Data Coordination and Integration Center (DCIC), Icahn School of Medicine at Mount Sinai, New York, NY, USA; Human Immune Monitoring Core, Icahn School of Medicine at Mount Sinai, New York, NY, USA; Center for Structural and Functional Neuroscience, University of Montana, Missoula, MT, USA; Cell Signaling Technology Inc., Danvers, MA, USA
Clustergrammer funding source(s)
Supported by the National Institutes of Health (NIH) grants U54HL127624, U54CA189201, and R01GM098316.

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