ClusterJudge statistics

info info

Citations per year

info

Popular tool citations

chevron_left Gene expression clustering chevron_right
info

Tool usage distribution map

Tool usage distribution map
info info

Associated diseases

Associated diseases
Want to access the full stats & trends on this tool?

ClusterJudge specifications

Information


Unique identifier OMICS_19670
Name ClusterJudge
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.3.0
Stability Stable
Requirements
stats, graphics, utils, testthat, lattice, biomaRt, rmarkdown, knitr, latticeExtra, httr, R(>=3.4), devtools, jsonlite, infotheo, yeastExpData
Maintained Yes

Download


bioconductor.png

Versioning


No version available

Maintainers


  • person_outline Frederick Roth <>
  • person_outline Adrian Pasculescu <>

Additional information


http://llama.mshri.on.ca/cgi/ClusterJudge/cluster_judge.pl

Publication for ClusterJudge

ClusterJudge citation

library_books

Network motif based identification of transcription factor target gene relationships by integrating multi source biological data

2008
PMCID: 2386822
PMID: 18426580
DOI: 10.1186/1471-2105-9-203

[…] from one data set to another. an empirical method [] is applied to determine an adequate value for m based on the distribution of distances between genes. the optimal cluster c is evaluated by the clusterjudge software [], which estimates the optimal cluster number using a figure of merit based on the mutual information between cluster membership and known gene attributes in go database. go […]


Want to access the full list of citations?
ClusterJudge institution(s)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA
ClusterJudge funding source(s)
Supported in part by the Howard Hughes Medical Institute Biomedical Research Support Program for Medical Schools.

ClusterJudge reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review ClusterJudge