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ClusterJudge specifications


Unique identifier OMICS_19670
Name ClusterJudge
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.3.0
Stability Stable
stats, graphics, utils, testthat, lattice, biomaRt, rmarkdown, knitr, latticeExtra, httr, R(>=3.4), devtools, jsonlite, infotheo, yeastExpData
Maintained Yes




No version available


  • person_outline Frederick Roth <>
  • person_outline Adrian Pasculescu <>

Additional information

Publication for ClusterJudge

ClusterJudge citation


Network motif based identification of transcription factor target gene relationships by integrating multi source biological data

PMCID: 2386822
PMID: 18426580
DOI: 10.1186/1471-2105-9-203

[…] from one data set to another. an empirical method [] is applied to determine an adequate value for m based on the distribution of distances between genes. the optimal cluster c is evaluated by the clusterjudge software [], which estimates the optimal cluster number using a figure of merit based on the mutual information between cluster membership and known gene attributes in go database. go […]

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ClusterJudge institution(s)
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA
ClusterJudge funding source(s)
Supported in part by the Howard Hughes Medical Institute Biomedical Research Support Program for Medical Schools.

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