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Protocols

ClusterMine360 specifications

Information


Unique identifier OMICS_09212
Name ClusterMine360
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Christopher N. Boddy

Publication for ClusterMine360

ClusterMine360 citations

 (4)
library_books

Current Status and Future Prospects of Marine Natural Products (MNPs) as Antimicrobials

2017
Mar Drugs
PMCID: 5618411
PMID: 28846659
DOI: 10.3390/md15090272

[…] ntaining website links to databases and tools used in genome mining and secondary metabolism research []. Automated tools such as antiSMASH [] BAGEL [] and PRISM [] and databases such as Bactibase [] ClusterMine360 [] and MIBiG [] represent just a few of the sophisticated in silico analytical tools which have quickly established themselves as the go-to resources for BGC identification, characteriz […]

library_books

Discovery Strategies of Bioactive Compounds Synthesized by Nonribosomal Peptide Synthetases and Type I Polyketide Synthases Derived from Marine Microbiomes

2016
Mar Drugs
PMCID: 4849084
PMID: 27092515
DOI: 10.3390/md14040080

[…] cular weight, number of amino acid monomers as well as literature references and producing organisms [,]. Another useful database of microbial polyketide and nonribosomal peptide gene clusters is the ClusterMine360 (www.clustermine360.ca). It takes advantage of crowd-sourcing by allowing researchers to make contributions into a sequence repository while automation is used to ensure high data consi […]

library_books

In silico methods for linking genes and secondary metabolites: The way forward

2016
PMCID: 5640692
PMID: 29062931
DOI: 10.1016/j.synbio.2016.03.001

[…] alysis of newly identified gene clusters. Some of the major databases which have cataloged very large number of experimentally characterized PKS and NRPS clusters with known biosynthetic products are ClusterMine360, IMG-ABC and MIBiG. Apart from the sequence information and catalytic domain organization, major utility of these databases is to obtain the chemical structures of secondary metabolite […]

call_split

IMG ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

2015
MBio
PMCID: 4502231
PMID: 26173699
DOI: 10.1128/mBio.00932-15
call_split See protocol

[…] elated to biosynthetic gene clusters. GenBank records with sequences longer than 3,000 bp were retained and manually curated for their encoded SM name, whenever possible. BCs were also retrieved from ClusterMine360 () and DoBiscuit () irrespective of their length and reconciled with those retrieved from the NCBI database in order to produce a nonredundant list of BCs. The resulting BCs were mapped […]

Citations

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ClusterMine360 institution(s)
Department of Chemistry; Department of Biology, Center for Advanced Research in Environmental Genomics, University of Ottawa, Ottawa, Ontario, Canada
ClusterMine360 funding source(s)
The National Science and Engineering Research Council of Canada (NSERC); Ontario Ministry of Research and Innovation; University of Ottawa

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